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rOpenSci

@ropensci@fosstodon.org
mastodon 4.7.3
  • Open on fosstodon.org

rOpenSci develops #RStats based tools to facilitate open science and access to open data.

7 Followers
12 Following
17 Posts
Joined October 29, 2022
Official Web Page:
https://ropensci.org/
How to contribute:
https://contributing.ropensci.org/
Developer Guide:
https://devguide.ropensci.org/
R-universe:
https://ropensci.org/r-universe/
Open post
rOpenSci @ropensci@fosstodon.org
· 45mo ago

☎️ Community Call: {targets} in Action
📆 Tue Jan 31, 12pm PST / 20:00 UTC

From using to debugging, learn about this pipeline tool for statistics and data science in R.

🎤 @landau@fosstodon.org (targets author)
@LeafyEricScott@fosstodon.org (using targets with HPC)
@joelnitta@fosstodon.org (using targets in bioinformatics)

All welcome. No RSVP needed

https://ropensci.org/commcalls/jan2023-targets/

#RStats
@rstats@a.gup.pe

ropensci.org

{targets} in Action · Community Call

Community Call covering {targets} troubleshooting and use cases.

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Open post
rOpenSci @ropensci@fosstodon.org
· 45mo ago

[blog] Expanding our Community through Multilingual Publishing

@yabellini@fosstodon.org, @PaobCorrales@twitter.com, @eliocamp@mastodon.social & @maelle@mastodon.social share some exciting work going on at rOpenSci!

🎉 Check out our progress and plans for translating materials into Spanish! Also, our plans to developing guidelines and tools for translating open source resources beyond rOpenSci.

https://ropensci.org/blog/2023/01/12/multilingual-publishing-en/

#RStats
@rstats@a.gup.pe

ropensci.org

Expanding our Community through Multilingual Publishing

We are translating rOpenSci's materials on best practices for software development, code review, and contribution to open source projects into Spanish! We are also developing guidelines and tools for translating open source resources to reach a wider audience. Learn about the project in this blog post.

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Open post
rOpenSci @ropensci@fosstodon.org
· 44mo ago

[technote] Dynamite for Causal Inference from Panel Data using Dynamic Multivariate Panel Models

@jouni_helske@fediscience.org explains the fascinating world of synthetic controls and interventions with clear examples exploring the power of dynamite.

https://ropensci.org/blog/2023/01/31/dynamite-r-package/

Our first blog post on a package to go through statistical review! 🎉🎉🎉

🙏 Thank yous to

rOpenSci reviewers: @nj_clark@twitter.com and @lucystats@mastodon.social
dynamite package coauthor: Santtu Tikka
Project: @PREDLIFEproject@twitter.com

#RStats
@rstats@a.gup.pe

ropensci.org

Dynamite for Causal Inference from Panel Data using Dynamic Multivariate Panel Models

Dynamite is a new R package for Bayesian modelling of complex panel data using dynamic multivariate panel models.

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Open post
rOpenSci @ropensci@fosstodon.org
· 45mo ago

January News 📮 #RStats

📆 {targets} Community Call 01/31
📆 Coworking
📓 Code of Conduct annual review & transparency report
🗒️ Multilingual publishing project
🗒️ {curl} 5.0
📦 new: {phruta}, {hoardr}
🙋 Calls for 📦 (co)maintainers
🧰 Package dev tips

https://ropensci.org/blog/2023/01/20/ropensci-news-digest-january-2023/

ropensci.org

rOpenSci News Digest, January 2023

targets community call, coworking, code of conduct report, new packages and package news

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Open post
rOpenSci @ropensci@fosstodon.org
· 45mo ago

Hooray! rOpenSci peer reviewed packages made it into @RStudioJoe@twitter.com's November 2022 Top 40 New Packages!
RViews: https://rviews.rstudio.com/2023/01/03/november-2022-top-40-new-cran-packages/

prismjs - Server-side rendering using prism.js (https://docs.ropensci.org/prismjs)
Maintainer: @opencpu@twitter.com

npi - Access the US National [healthcare] Provider Identifier Registry API (https://docs.ropensci.org/npi)
Maintainer: @frankfarach@twitter.com

#RStats
@rstats@a.gup.pe

rviews.rstudio.com

November 2022: "Top 40" New CRAN Packages

One hundred sixty-seven new packages made it to CRAN in November: Here are my “Top 40” selections in fourteen categories: Climate Modeling: Computational Methods, Data, Ecology, Epidemiology, Genomics, Machine Learning, Mathematics, Networks, Pharma, Statistics, Time Series, Utilities, and Visualization. Happy New Year everyone! I hope 2023 is good to you all.

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Open post
rOpenSci @ropensci@fosstodon.org
· 45mo ago

[technote] curl 5.0.0: massive concurrent downloads and HTTP/2 https://ropensci.org/blog/2023/01/13/curl5-release/

ropensci.org

curl 5.0.0: massive concurrent downloads and HTTP/2

A new major version of the curl package has been released to CRAN. This release both brings major big internal improvements as well as new user-facing functionality, in particular with respect to concurrent downloads.

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Open post
rOpenSci @ropensci@fosstodon.org
· 45mo ago

rOpenSci is proud to welcome a new package to our software suite! 🎉

phruta: Phylogenetic Reconstruction and Time-dating by @cromanpa@ecoevo.social

Docs: https://docs.ropensci.org/phruta
Peer review: https://github.com/ropensci/software-review/issues/458

🙏 Thank you to reviewers @raynamharris@twitter.com and Frederick Boehm!

#RStats
@rstats@a.gup.pe

Phylogenetic Reconstruction and Time-dating
docs.ropensci.org

Phylogenetic Reconstruction and Time-dating

The phruta R package is designed to simplify the basic phylogenetic pipeline. Specifically, all code is run within the same program and data from intermediate steps are saved in independent folders. Furthermore, all code is run within the same environment which increases the reproducibility of your analysis. phruta retrieves gene sequences, combines newly downloaded and local gene sequences, and performs sequence alignments.

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Open post
rOpenSci @ropensci@fosstodon.org
· 44mo ago

[blog] Throw-back Thursday!

Is your R package easy to cite? Never to late to make sure it is!

⌛ Make Your R Package Easier to Cite by @maelle@mastodon.social, @sckottie@fosstodon.org, and @inundata@hachyderm.io
📅 Feb 16, 2021
🔗 https://ropensci.org/blog/2021/02/16/package-citation/

#RStats
@rstats@a.gup.pe

ropensci.org

Make Your R Package Easier to Cite

Some tips to promote scientific citations of your work.

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Open post
rOpenSci @ropensci@fosstodon.org
· 45mo ago

Improved permanent URL schema for r-universe.dev https://ropensci.org/blog/2023/01/30/runiverse-permanent-urls/

ropensci.org

Improved permanent URL schema for r-universe.dev

We have improved the URL schema for the r-universe.dev front-end to make it even easier to find and share a link to an R package, article, API, or other resource.

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Open post
rOpenSci @ropensci@fosstodon.org
· 45mo ago

[help wanted] rOpenSci 📦 citesdb (maintained by @noamross@ecoevo.social) is looking for some help! 🙏

Check out the issue by @maelle@mastodon.social labelled 'help wanted':

"New Maintainer Wanted :-)"
at https://github.com/ropensci/citesdb/issues/21

#RStats
@rstats@a.gup.pe

GitHub

New Maintainer Wanted :-) · Issue #21 · ropensci-archive/citesdb

Or new maintainer team. 😸 ⚠️ A starting point to tackle open issues ⚠️ If you're interested, please comment in the issue. For more info, see our guidance on Changing package maintainers; our Packag...

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Open post
rOpenSci @ropensci@fosstodon.org
· 44mo ago

📣 Starting in 30 minutes!
☎️ Community Call: {targets} in Action

All welcome. No RSVP needed

#RStats @rstats@a.gup.pe

https://fosstodon.org/@ropensci/109762064873134882

Fosstodon

rOpenSci (@ropensci@fosstodon.org)

Our next community call is coming up next week! Come join our discussion of the R package for handling pipelines and workflows, targets! ☎️ Community Call: {targets} in Action 📆 Tue Jan 31, 12pm PST / 20:00 UTC From using to debugging, learn about this pipeline tool for statistics and data science in R. 🎤 @landau (targets author) @LeafyEricScott (using targets with HPC) @joelnitta (using targets in bioinformatics) All welcome. No RSVP needed https://ropensci.org/commcalls/jan2023-targets/ #

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Open post
rOpenSci @ropensci@fosstodon.org
· 45mo ago

Our next community call is coming up next week!
Come join our discussion of the R package for handling pipelines and workflows, targets!

☎️ Community Call: {targets} in Action
📆 Tue Jan 31, 12pm PST / 20:00 UTC

From using to debugging, learn about this pipeline tool for statistics and data science in R.

🎤 @landau@fosstodon.org (targets author)
@LeafyEricScott@fosstodon.org (using targets with HPC)
@joelnitta@fosstodon.org (using targets in bioinformatics)

All welcome. No RSVP needed

https://ropensci.org/commcalls/jan2023-targets/

#RStats
@rstats@a.gup.pe

ropensci.org

{targets} in Action · Community Call

Community Call covering {targets} troubleshooting and use cases.

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Open post
rOpenSci @ropensci@fosstodon.org
· 45mo ago

[blog] rOpenSci 2022 Code of Conduct Transparency Report and Code of Conduct Annual Review

📌 https://ropensci.org/blog/2023/01/06/transparency2022/

🔗 https://ropensci.org/blog/2023/01/06/conduct2023/

CoC Committee Megan Carter, @mpadge@nerdculture.de, Kara Woo and @yabellini@fosstodon.org

ropensci.org

rOpenSci 2022 Code of Conduct Transparency Report

rOpenSci 2022 Code of Conduct Transparency Report

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Open post
rOpenSci @ropensci@fosstodon.org
· 45mo ago

[help wanted] rOpenSci 📦 geojsonio (maintained by @MikeMahoney218@fosstodon.org) is looking for some help! 🙏

Check out the issue labelled 'help wanted':

"Workaround to convert geoJSON to topoJSON"
at https://github.com/ropensci/geojsonio/issues/193

#RStats
@rstats@a.gup.pe

GitHub

Workaround to convert geoJSON to topoJSON · Issue #193 · ropensci/geojsonio

New to writing issues so apologies if this isn't done correctly but I'm curious if there's any known workarounds to converting geoJSON to topoJSON. I know that issue 168 made geojsonio::topojson_wr...

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Open post
rOpenSci @ropensci@fosstodon.org
· 45mo ago

rOpenSci coworking and office hours coming up in an hour!

Today's theme: Working with new R users with cohost @alex_koiter@twitter.com

https://ropensci.org/events/coworking-2023-01/

#RStats
@rstats@a.gup.pe

ropensci.org

Social Coworking and Office Hours - Working with new R users

Monthly coworking for productivity, asking questions, socializing

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Open post
rOpenSci @ropensci@fosstodon.org
· 45mo ago

Coworking next week!

Theme: Working with new R users

Tues Jan 10th 14:00 European Central (13h UTC)

Join @steffilazerte@fosstodon.org and @alex_koiter@twitter.com

- General coworking
- Annotate a script/qmd/Rmd to help a friend/colleague/student
- Brainstorm ideas for supporting and encouraging new R users
- Chat with Alex about sharing the love of R with new R users!

https://ropensci.org/events/coworking-2023-01/

#RStats
@rstats@a.gup.pe

ropensci.org

Social Coworking and Office Hours - Working with new R users

Monthly coworking for productivity, asking questions, socializing

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Open post
rOpenSci @ropensci@fosstodon.org
· 45mo ago

[help wanted] rOpenSci 📦 rnaturalearth (maintained by @southmapr@twitter.com) is looking for some help! 🙏

Check out the issue by @maelle@mastodon.social labelled 'help wanted':

"New Maintainer Wanted"
at https://github.com/ropensci/rnaturalearth/issues/62

#RStats
@rstats@a.gup.pe

GitHub

New Maintainer Wanted · Issue #62 · ropensci/rnaturalearth

Or new maintainer team. 😸 The following issues would need to be solved Fixing the code connecting to a data source see #29 and #61 Updating dependencies so a bit of refactoring see #60 If you're in...

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