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@bioinfhotep@genomic.social

2026-04-18 09:38 UTC

@sebffischer@mastodon.social don t know about bayesian methods in general, but if i have time and since i have some Codex Sub now, i will try to do some ragebait induced NeoedgeR and compare to the numba using python port of edgeR https://brianrepko.github.io/blog/posts/2026-02-26-edgepython-and-ai/ https://github.com/pachterlab/edgePython Testing on gpu should be possible since i have a gaming PC now (and i manage to install huge NVIDIA binaries on WSL) But it would be great to have scripts for setting up anvil dev environment for testing on say google collab

Replies (1)

  • @sebffischer@mastodon.social 2026-04-19 05:25

    @bioinfhotep@genomic.social there is this docker image: https://github.com/r-xla/docker/blob/main/cuda-base/Dockerfile not sure whether it will work in colab

    Open ##2744193